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==Molecular level simulations==
[http://cellcollective.org/ Cell Collective] is a modeling software that enables one to house dynamical biological data, build computational models, stimulate, break and recreate models. The development is led by Tomas Helikar, PhD Bioformatics, a researcher within the field of computational biology. It is designed for biologists, students learning about computational biology, teachers focused on teaching life sciences, and researchers within the field of life science. The complexities of math and computer science are built into the backend and one can learn about the methods used for modeling biological species, but complex math equations, algorithms, programming are not required and hence won't impede model building.
The mathematical framework behind Cell Collective is based on a common qualitative (discrete) modeling technique where the regulatory mechanism of each node is described with a logical function [for more comprehensive information on logical modeling, see <ref>Morris MK, Saez-Rodriguez J, Sorger PK, Lauffenburger DA.. Logic-based models for the analysis of cell signaling networks. Biochemistry (2010) 49(15):3216–24.10.1021/bi902202q
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