Module:Infobox gene: Difference between revisions

Revision as of 05:52, 23 June 2016

Revision as of 06:31, 29 June 2016

Line 5:

local infoboxImage = require('Module:InfoboxImage').InfoboxImage

local function check_values(f,args)

--local u= table.upack(args)

local exist, val = pcall(f, unpack(args))

if exist and val ~= nil then

return(val)

else

return("'''VALUE_ERROR'''")

end

end

--on a page {{#invoke:Sandbox/genewiki/alllua|getTemplateData|QID=Q14865053}}

Line 112 ⟶ 121:

if entity then --only require the main gene entity

--a list variables of all the data in the info box

local name = check_values(p.getLabel(,{entity})

local entrez_gene = check_values(p.getValue(, {entity, "P351", "n/a"} )

local entrez_gene_mm = check_values(p.getValue(, {entity_mouse, "P351", "n/a"})

local image = check_values( p.getImage(, {entity, "P18", " ", "250px"}) --need to set size

local uniprotID_hs = check_values(p.getValueProtein(, {entity_protein, "P352", "n/a"})

local uniprotID_mm = check_values(p.getValueProtein(, {entity_mouse_protein, "P352", "n/a"})

local pdbIDs = check_values(p.getPDB(, {entity_protein}) --makes a list with links to RCSB

local aliases = check_values(p.getAliases(, {entity})

local gene_symbol = check_values(p.getValue(, {entity, "P353"})

local hgnc_id = check_values(p.getValue(, {entity, "P354"})

local homologene_id = check_values(p.getValue(, {entity, "P593"})

local omim_id = check_values(p.getValue(, {entity, "P492"})

local mgi_id = check_values(p.getValue(, {entity_mouse, "P671"})

local ChEMBL_id = check_values(p.getValue(, {entity_protein, "P592"})

local IUPHAR_id = check_values(p.getValue(, {entity_protein, "P595"})

local ec_no = check_values(p.getValueProtein(, {entity_protein, "P591"})

local mol_funct = check_values(p.getGO(, {entity_protein, "P680"})

local cell_comp = check_values(p.getGO(, {entity_protein, "P681"})

local bio_process = check_values(p.getGO(, {entity_protein, "P682"})

local expression_images = check_values(p.getImage(, {entity,"P692","<br><br>","250px"})

local ensembl = check_values(p.getValue(, {entity, "P594", "n/a"})

local ensembl_mm = check_values(p.getValue(, {entity_mouse, "P594", "n/a"})

local refseq_mRNA = check_values(p.getRefseq_mRNA(, {entity, "P639", "n/a"})

local refseq_mRNA_mm = check_values(p.getRefseq_mRNA(, {entity_mouse, "P639", "n/a"})

local refseq_prot = check_values(p.getRefseq_protein(, {entity_protein, "P637", "n/a"})

local refseq_prot_mm = check_values(p.getRefseq_protein(, {entity_mouse_protein, "P637", "n/a"})

local gstart = check_values(p.getChromosomeLoc(, {entity, "P644", "hg"})

local gend = check_values(p.getChromosomeLoc(, {entity, "P645", "hg"})

local chr = check_values(p.trimChromosome(, {entity})

local db = check_values(p.getAliasFromGenomeAssembly(, {entity,"hg"})

local gstart_mm = check_values(p.getChromosomeLoc(, {entity_mouse, "P644", "mm"})

local gend_mm = check_values(p.getChromosomeLoc(, {entity_mouse, "P645", "mm"})

local db_mm = check_values(p.getAliasFromGenomeAssembly(, {entity_mouse,"mm"})

local chr_mm = check_values( p.trimChromosome(, {entity_mouse})

local disease, dis_ref = p.getDisease(entity, "P2293")''

if p.getDisease(entity, "P2293") then disease, dis_ref = p.getDisease(entity, "P2293") else disease, dis_ref = {"'''VALUE_ERROR'''","'''VALUE_ERROR'''" } end

local drug = check_values(p.getDrug(, {entity_protein, "P129"})

--define Global Color Scheme