Open Bioinformatics Foundation: Difference between revisions

Revision as of 04:07, 7 July 2016

Revision as of 01:43, 12 July 2016

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==Projects==

The foundation hosts servers for mailing lists, websites, and code repositories for a number of bioinformatics-related open source projects, including:<ref name=projects>{{cite web|title=Projects - Open Bioinformatics Foundation|url=http://www.open-bio.org/wiki/Projects|accessdate=1 September 2014}}</ref>

* [[BioDAS]] - XML Infrastructure for exchanging genome annotations<ref name=biodas-main>{{cite web|title=BioDAS|url=http://www.biodas.org/wiki/Main_Page|accessdate=1 September 2014}}</ref>

* [[BioJava]] - Java toolkit

* [[BioMOBY]] - Data and application execution through web services

* [[BioPerl]] - Perl toolkit

* BioPipe - Pipelines and workflow project for large-scale bioinformatics; now defunct<ref name=biopipe>{{cite web|title=Biopipe - BioPerl|url=http://www.bioperl.org/wiki/Biopipe|accessdate=1 September 2014}}</ref>

* [[BioPython]] - Python toolkit

* [[BioRuby]] - Ruby toolkit

* [[BioPHP]]

* [[BioSQL]] - [[RDBMS]] Database schema for storing sequences, annotations, taxa data.

* [[BioSmalltalk]] Smalltalk toolkit

* OBDA - a standard for sequence data access locally, remotely, and via [[RDBMS]]

* [[EMBOSS]] - Sequence analysis toolkit.