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The sequence changes directly involved with an RFLP can also be analyzed more quickly by PCR. Amplification can be directed across the altered restriction site, and the products digested with the restriction enzyme. This method has been called [[Cleaved Amplified Polymorphic Sequence]] (CAPS). Alternatively, the amplified segment can be analyzed by [[Allele specific oligonucleotide]] (ASO) probes, a process that can often be done by a simple [[Dot blot]].
*[[STR analysis]]
*[[Amplified fragment length polymorphism|AFLP]]
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