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Several tools for pairwise and multiple structural alignments are available on the web:
{| border="1" cellpadding="1"
|-
! NAME
! Description ||
|-
| MAMMOTH
| '''Ma'''tching '''M'''olecular '''M'''odels '''O'''btained from '''T'''heory || Cα || MStA || [http://ub.cbm.uam.es/mammoth/mult/ server] || AR. Ortiz || 2002
|-
| CE
| '''C'''ombinatorial '''E'''xtension || Cα ||MStA || [http://cl.sdsc.edu/ce.html server] || I. Shindyalov || 2000
|-
| DALI
| '''D'''istance Matrix '''A'''lignment || Contact Map || MStA || [http://www.ebi.ac.uk/dali/ server] || L. Holm || 1993
|-
| VAST
| '''V'''ector '''A'''lignment '''S'''earch '''T'''ool || SS || Pair || [http://www.ncbi.nih.gov/Structure/VAST/vastsearch.html server] || S. Bryant || 1996
|-
| PrISM
| '''P'''rotein '''I'''nformatics '''S'''ystems for '''M'''odeling || SS || MStA || [http://honiglab.cpmc.columbia.edu server] || B. Honig || 2000
|-
| SSAP
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|NA|| SS || [http://zlab.bu.edu/k2/ server] || Z. Weng || 2000
|}
== '''KEY MAP:''' ==
'''Cα''' -- Backbone (Cα) Alignment;
'''SS''' -- Secondary Structure Element Alignment;
'''Pair''' -- Pairwise Alignment (2 structures);
'''Multi''' -- Multiple Structure Alignment (MStA);
== See also ==
| |||