Structural alignment: Difference between revisions

Revision as of 21:11, 19 November 2004

Revision as of 22:45, 19 November 2004

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| MAMMOTH

| '''Ma'''tching '''M'''olecular '''M'''odels '''O'''btained from '''T'''heory || Cα || MStAMulti || [http://ub.cbm.uam.es/mammoth/mult/ server] || AR. Ortiz || 2002

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| CE

| '''C'''ombinatorial '''E'''xtension || Cα ||MStAMulti || [http://cl.sdsc.edu/ce.html server] || I. Shindyalov || 2000

|-

| DALI

| '''D'''istance Matrix '''A'''lignment || Contact Map || MStAMulti || [http://www.ebi.ac.uk/dali/ server] || L. Holm || 1993

|-

| VAST

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| PrISM

| '''P'''rotein '''I'''nformatics '''S'''ystems for '''M'''odeling || SS || MStAMulti || [http://honiglab.cpmc.columbia.edu server] || B. Honig || 2000

|-

| SSAP

| '''S'''equential '''S'''tructure '''A'''lignment '''P'''rogram || SS || Multi || [http://www.biochem.ucl.ac.uk/cgi-bin/cath/GetSsapRasmol.pl server] || C. Orengo || 1989

|-

| SARF2

| '''S'''patial '''A'''rrangements of '''B'''ackbone '''F'''ragments || SS || Pair ||[http://123d.ncifcrf.gov/sarf2.html server] || D. Fischer || 1996

|-

| KENOBI/K2

|NA|| SS||Pair || [http://zlab.bu.edu/k2/ server] || Z. Weng || 2000

|-

|STAMP

|'''ST'''ructural '''A'''lignment of '''M'''ultiple '''P'''rotein || Sequence || Pair || [http://bioweb.pasteur.fr/seqanal/structure/stamp-fr.html server] || G. Barton || 1992

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| MASS

| Multiple Alignment by Secondary Structure || SS || Multi || [http://bioinfo3d.cs.tau.ac.il/MASS server] || R. Nussinov || 2003

|-

| MALECON

| NA || Geometry ||Multi || NA || S. Wodak || 2004

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| MultiProt

| NA || Geometry || Multi || [http://bioinfo3d.cs.tau.ac.il/MultiProt server] || R. Nussinov || 2004

|}

== '''KEY MAP:''' ==