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== Open source software releases ==
[[Image:Iv3d-torso.png|250px|thumb| A [[Computed tomography|CT]] scan of a human torso rendered with [[ImageVis3D]]]]
The SCI Institute releases [[open source]] [[software package]]s for many of the projects developed by researchers for use by the [[scientific visualization]] and [[medical imaging]] communities. All projects are released under the [[MIT software license]]. Notable projects released by SCI include:
Besides research in the areas mentioned above, a particular focus of SCI has been to develop innovative and robust software packages, and release them as [[open source|open-source software]]. The latest releases and source code lives on [https://github.com/SCIInstitute Github]. Examples:
* [http://www.scirun.org [SCIRun],] a- [[Problem Solving Environment]] (PSE), for modeling, simulation and visualization of scientific problems.
* [[ImageVis3D]] - [[volume rendering]] application with multidimensional [[transfer function]] visualization support
* [http://www.biomesh3d.org BioMesh3D], a tetrahedral [[mesh generation|mesh generator]], that is capable of generating multi-material quality meshes out of segmented biomedical image data.
* [http://www.seg3d.org [Seg3D],] an- interactive [[image segmentation]] tool.
* [ https://visus.us/ Visus[ViSUS] ,] - Visualization Streams for Ultimate Scalability .▼* [[ImageVis3D]], a lightweight, feature-rich [[volume rendering]] application.
* [ http://www.sci.utah.edu/software/shapeworks.html [ShapeWorks] ,] a- new[[statistical methodshape foranalysis]] tool that constructingconstructs compact statistical point-based models of ensembles of similar shapes that does not rely on any specific [[surface parameterisation|surface parameterization]] .▼▲* [https://visus.us/ Visus], Visualization Streams for Ultimate Scalability.
* [ http://www.fluorender.org [FluoRender] ,] an- interactive rendering tool for [[confocal microscopy]] data visualization. ▼▲* [http://www.sci.utah.edu/software/shapeworks.html ShapeWorks], a new method for constructing compact statistical point-based models of ensembles of similar shapes that does not rely on any specific [[surface parameterisation|surface parameterization]].
* [[VisTrails]] , a- [[scientific workflow system|scientific workflow management system]]. ▼* [http://www.sci.utah.edu/software/map3d.html map3d], a scientific visualization application written to display and edit three-dimensional geometric models and scalar time-based data associated with those models.
* [[Cleaver]] - multi-material [[image-based meshing|tetrahedral meshing]] API and application
* [http://www.sci.utah.edu/software/uintah.html Uintah], a set of software components and libraries that facilitate the solution of [[partial differential equations]] on structured adaptive mesh refinement grids using hundreds to thousands of processors.
* [ http://www.febio.org [FEBio] ,] is a- nonlinear [[finite element solver that is]] specifically designed for biomechanical applications .▼* [http://www.sci.utah.edu/software/fiberviewer.html FiberViewer], a comprehensive, integrated, open-source environment for medical image visualization and analysis.
* [ http://www.sci.utah.edu/software/vispack.html [VISPACK] ,] a- C++ library that includes matrix, image, and volume objects .▼* [http://www.sci.utah.edu/software/atlaswerks.html AtlasWerks], an open-source (BSD license) software package for medical image [[texture atlas|atlas]] generation.
* [ http://www.sci.utah.edu/software/teem.html [Teem] ,] a- collection of libraries for representing, processing, and visualizing scientific [[raster data]] .▼* [http://www.sci.utah.edu/software/ncr-toolset.html NCR Toolset], a collection of software tools for the reconstruction and visualization of [[neural circuitry]] from [[electron microscopy]] data.
▲* [http://www.fluorender.org FluoRender], an interactive rendering tool for [[confocal microscopy]] data visualization.
* [http://www.sci.utah.edu/software/elvis.html ElVis], a visualization system created for the accurate and interactive visualization of scalar fields produced by high-order spectral/hp [[finite element]] simulations.
▲* [[VisTrails]], a [[scientific workflow system|scientific workflow management system]].
* [http://www.sci.utah.edu/software/afront.html Afront], a tool for meshing and remeshing surfaces.
* [http://www.sci.utah.edu/software/cleaver.html Cleaver], A MultiMaterial Tetrahedral Meshing API and Application.
* [http://www.sci.utah.edu/software/epicanvas.html EpiCanvas], Infectious Disease Weather Map.
▲* [http://www.febio.org FEBio], is a nonlinear finite element solver that is specifically designed for biomechanical applications.
* [http://www.febio.org/software/preview PreView], a Finite Element (FE) [[preprocessor|pre-processor]] that has been designed specifically to set up FE problems for FEBio
* [http://www.febio.org/software/postview PostView], a Finite Element (FE) [[finite element model data post-processing|post-processor]] that is designed to post-process the results from FEBio.
* [http://www.sci.utah.edu/bisti.html STCR], a [[MATLAB]]-based program to reconstruct undersampled DCE radial data, with [[compressed sensing]] methods.
* [http://www.sci.utah.edu/software/exoshapeaccel.html ExoshapeAccel], a C/C++ application for estimating continuous evolution from a discrete collection of shapes, designed to produce realistic anatomical trajectories.
▲* [http://www.sci.utah.edu/software/vispack.html VISPACK], a C++ library that includes matrix, image, and volume objects.
▲* [http://www.sci.utah.edu/software/teem.html Teem], a collection of libraries for representing, processing, and visualizing scientific [[raster data]].
==Notable researchers==
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