Sequence clustering: Difference between revisions

Revision as of 20:45, 9 May 2018

Revision as of 20:56, 9 May 2018

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* Virus Orthologous Clusters:<ref>{{cite web|url=http://athena.bioc.uvic.ca/tools/VOCS|title=VOCS - Viral Bioinformatics Resource Center|work=uvic.ca}}</ref> A viral protein sequence clustering database; contains all predicted genes from eleven virus families organized into ortholog groups by BLASTP similarity

* Skipredudant EMBOSS tool<ref>{{cite web|url=http://bioweb2.pasteur.fr/docs/EMBOSS/skipredundant.html|title=EMBOSS: skipredundant|work=pasteur.fr}}</ref> to remove redundant sequences from a set

* CLUSS<ref>http://prospectus.usherbrooke.ca/CLUSS/</ref> Algorithm<ref>{{cite web|url=https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-8-286|title=CLUSS Algorithm : Clustering non-alignable protein sequences|work=prospectus.usherbrooke.ca}}</ref> to identify groups of structurally, functionally, or evolutionarily related hard-to-align protein sequences. CLUSS webserver <ref>http://prospectus.usherbrooke.ca/CLUSS/</ref>

* CLUSS2 Algorithm<ref>{{cite web|url=https://www.inderscienceonline.com/doi/abs/10.1504/IJCBDD.2008.02019|title=CLUSS2 : Alignment-independent algorithm for clustering protein families with multiple biological functions|work=www.inderscienceonline.com}}</ref> for clustering families of hard-to-align protein sequences with multiple biological functions. CLUSS2 webserver <ref>http://prospectus.usherbrooke.ca/CLUSS/</ref>

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