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With an average length of {{Convert|45|cm|abbr=on}} and an average height of {{Convert|30|cm|abbr=on}}, the Java mouse-deer is the smallest [[Neontology|extant]] (living) even-toed ungulate, as well as the smallest extant ungulate.<ref name=eof5/><ref name=erythrocytes9/>
The weight of the Java mouse-deer ranges from {{Convert|1|to|2|kg}}, with females falling on the lower end of the spectrum. It has an average tail length of about {{Convert|5|cm|abbr=on}}. The Java mouse-deer is also considered to be the most primitive [[ruminant]] based on its behaviour and the [[fossil]] record,
The Java mouse-deer is [[endothermic]] and [[homoeothermic]], and has an average basal metabolic rate of about 4.883 [[watt]]s.<ref name=eof5/> It also has the smallest [[red blood cell]]s of any mammal, and 12.8% of them have pits.<ref name=erythrocytes9>{{cite journal | last1 = Fukuta | first1 = K. | last2 = Kudo | first2 = H. | last3 = Jalaludin | first3 = S. | year = 1996 | title = Unique pits on the erythrocytes of the lesser mouse-deer, Tragulus javanicus | journal = Journal of Anatomy | volume = 189 | issue = 1| pages = 211–213 | pmc=1167845 | pmid=8771414}}</ref> Pitted red blood cells are unique and have not been seen before either physiologically or pathologically.
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