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Line 45: \|pmid=11917018 \|doi=10.1093/nar/30.7.1575 \|pmc=101833}}</ref> * BAG: a graph theoretic sequence clustering algorithm<ref>{{cite web \|url=http://bio.informatics.indiana.edu/sunkim/BAG/ \|title=Archived copy \|accessdate=2004-02-19 \|~~deadurl~~url-status=~~yes~~dead \|archiveurl=https://web.archive.org/web/20031206172749/http://bio.informatics.indiana.edu/sunkim/BAG/ \|archivedate=2003-12-06 ~~\|df=~~ }}</ref> * JESAM:<ref>{{cite web\|url=http://www.littlest.co.uk/software/bioinf/old_packages/jesam/jesam_paper.html\|title=Bioinformatics Paper: JESAM: CORBA software components for EST alignments and clusters\|work=littlest.co.uk}}</ref> Open source parallel scalable DNA alignment engine with optional clustering software component * UICluster:<ref>http://ratest.eng.uiowa.edu/pubsoft/clustering/</ref> Parallel Clustering of EST (Gene) Sequences Line 52: * PATDB: a program for rapidly identifying perfect substrings * nrdb:<ref>{{Cite web \| url=https://web.archive.org/web/20080101032917/http://blast.wustl.edu/pub/nrdb/ \| title=Index of /pub/nrdb}}</ref> a program for merging trivially redundant (identical) sequences * CluSTr:<ref>{{cite web \|url=http://www.ebi.ac.uk/clustr/ \|title=Archived copy \|accessdate=2006-11-23 \|~~deadurl~~url-status=~~yes~~dead \|archiveurl=https://web.archive.org/web/20060924012903/http://www.ebi.ac.uk/clustr/ \|archivedate=2006-09-24 ~~\|df=~~ }}</ref> A single-linkage protein sequence clustering database from Smith-Waterman sequence similarities; covers over 7 mln sequences including UniProt and IPI * ICAtools<ref>{{cite web\|url=http://www.littlest.co.uk/software/bioinf/old_packages/icatools/\|title=Introduction to the ICAtools\|work=littlest.co.uk}}</ref> - original (ancient) DNA clustering package with many algorithms useful for artifact discovery or EST clustering * Skipredudant EMBOSS tool<ref>{{cite web\|url=http://bioweb2.pasteur.fr/docs/EMBOSS/skipredundant.html\|title=EMBOSS: skipredundant\|work=pasteur.fr}}</ref> to remove redundant sequences from a set

Sequence clustering: Difference between revisions