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Dongilbert (talk | contribs) m Updated SeqPup official website and corrected name spelling |
→Alignment viewers, editors: arb added by its maintainer |
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|Cross-platform
| {{Official website|https://pypi.org/project/alv/}}, see also {{GitHub|https://github.com/arvestad/alv}}
|-
| [[ARB_Project|arb]]
| {{yes|structure editable, show bond in helix sequence regions, 2D molecule viewer}}
| {{yes|MUSCLE, MAFFT, ClustalW, ProbCons, FastAligner (region-align+auto-reference)}}
| {{yes|arb-parsimony & -NJ, RAxML, PHYML, Phylip, FastTree2, MrBayes}}
| Edits huge alignments and trees. Supports NUCs + AA. Displays codons below DNA. Custom column highlighting (e.g. by conservation profiles). Designs, matches and [http://www.arb-home.de/images/arb_secedit_large.png visualizes probes].
| [[FASTA format|FASTA]], [[GenBank]], [[EMBL]], [[Newick format|Newick]]
| {{proprietary}}, [[freeware]], [http://vc.arb-home.de/readonly/trunk/arb_LICENSE.txt arb license], open modifiable source
| No
|Linux, Mac OS (homebrew)
| {{Official website|http://www.arb-home.de/}}
|-
| Base-By-Base
|