Structure validation: Difference between revisions

Revision as of 17:49, 11 February 2020

Revision as of 09:16, 6 March 2020

Line 124:

** [http://eds.bmc.uu.se/eds/ EDS (Electron Density Server)]<ref>{{cite journal | vauthors = Kleywegt GJ, Harris MR, Zou JY, Taylor TC, Wählby A, Jones TA | title = The Uppsala Electron-Density Server | journal = Acta Crystallographica Section D | volume = 60 | issue = Pt 12 Pt 1 | pages = 2240–9 | date = December 2004 | pmid = 15572777 | doi = 10.1107/s0907444904013253 }}</ref>

** [[Coot (software)|Coot]] - modeling software (built-in validation) [http://www.biop.ox.ac.uk/coot/]<ref>{{cite journal | vauthors = Emsley P, Lohkamp B, Scott WG, Cowtan K | title = Features and development of Coot | journal = Acta Crystallographica Section D | volume = 66 | issue = Pt 4 | pages = 486–501 | date = April 2010 | pmid = 20383002 | pmc = 2852313 | doi = 10.1107/s0907444910007493 }}</ref>

** [httphttps://wwwpdb-redo.cmbi.ru.nl/pdb_redoeu/ PDB_REDOPDB-REDO] - X-ray model optimization: rebuilding and refining all models using contemporary techniques<ref>{{cite journal | vauthors = Joosten RP, Joosten K, Murshudov GN, Perrakis A | title = PDB_REDO: constructive validation, more than just looking for errors | journal = Acta Crystallographica Section D | volume = 68 | issue = Pt 4 | pages = 484–96 | date = April 2012 | pmid = 22505269 | pmc = 3322608 | doi = 10.1107/s0907444911054515 }}</ref>

** [[PROSESS]] - Protein Structure Evaluation Suite & Server

** [[Resolution by Proxy]], ResProx - protein model resolution-by-proxy