Carbohydrate Structure Database: Difference between revisions

Revision as of 12:41, 9 May 2020

Revision as of 12:44, 9 May 2020

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* CCSD (Carbbank <ref>{{cite journal|author=Doubet S.|author2=Albersheim P.| date=1992|journal=Glycobiology|volume=2|issue=6 |pages=505–507 |title=CarbBank|PMID=1472756|doi=10.1093/glycob/2.6.505}}</ref>) database (approx. 3000 records).

The data are selected and added to CSDB manually by browsing original scientific publications. The data originating from other databases are subject to error-correction and approval procedures.<ref name="Critical">{{cite journal| author=Egorova K.S.| author2=Toukach Ph.V.| date=2012|journal=Journal of Chemical Information and Modeling |volume=52|pages=2812–2814 |title=Critical analysis of CCSD data quality|doi=10.1021/ci3002815|PMID=23025661}}</ref>

As of the beginning of 2017, the coverage on [[bacteria]] and [[archaea]] is ca. 80% of carbohydrate structures published in scientific literature in the yearssince 1943 - 2015.<ref name="Merged_CSDB"/> The time lag between the publication of relative data and their deposition into CSDB is about 18 months. Plants are covered up to 1997, and fungi up to 20052013.<ref name="PFCSDB">{{cite journal| author=Egorova K.S.| author2=Toukach Ph.V.| date=2013|journal=Carbohydrate Research |volume=389|pages=112–114|title=Expansion of coverage of Carbohydrate Structure Database (CSDB)|doi=10.1016/j.carres.2013.10.009|PMID=24680503}}</ref>

CSDB does not cover data from the [[animalia]] ___domain, except [[Protozoa|unicellular metazoa]]. There is a number of dedicated databases on [[animal]] [[carbohydrates]], e.g. [http://www.unicarbkb.org/ UniCarbKB] <ref name="unicarbkb">{{cite journal|author=Campbell M.P.|author2=Packer N.H. | date=2016|journal=Biochimica et Biophysica Acta |volume=1860|issue=8 |pages=1669–1675 |title=UniCarbKB: New database features for integrating glycan structure abundance, compositional glycoproteomics data, and disease associations|doi=10.1016/j.bbagen.2016.02.016|PMID=26940363}}</ref> or [http://glycosciences.de GLYCOSCIENCES.de].<ref>{{cite journal|author=Lütteke T.|author2=Bohne-Lang A.|author3=Loss A.|author4=Goetz T.|author5=Frank M.|author6=von der Lieth C.-W.| date=2006|journal=Glycobiology|volume=16|issue=5 |pages=71R-81R |title=GLYCOSCIENCES.de: an Internet portal to support glycomics and glycobiology research|doi=10.1093/glycob/cwj049|PMID=16239495}}</ref>