BioCompute Object: Difference between revisions

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== Implementations ==
The first mainstream software package that is compatible with the BioCompute specification is [https://galaxy.aws.biochemistry.gwu.edu/ Galaxy]. There are also several internally developed [[Open-source software|open source]] software packages and web applications that implement the BioCompute specification. For example, the simple R package biocompute<ref name="biocompute-r">{{cite web|url=https://cran.r-project.org/package=biocompute|title=CRAN - Package biocompute|publisher=cran.r-project.org|accessdate=2019-11-28}}</ref> can create, validate, and export BioCompute Objects. The [https://github.com/biocompute-objectssbg/bco_editorgcs BioComputeGenomics EditorCompliance Suite] is a webShiny applicationapp that canoffers createsimilar andfeatures editto BioComputeregular Objectsexpressions basedfound onin all modern text editors. There are several internally developed [[Open-source software|open source]] software packages and web applications that implement the BioCompute schemaspecification, three of which have been deployed in a publicly accessible [[Amazon_Web_Services|AWS]] [[Amazon_Elastic_Compute_Cloud|EC2]] [[Cloud_computing|cloud]]. TheThese include an instance of the [[High-performance_Integrated_Virtual_Environment|High-performance Integrated Virtual Environment]], the [https://github.com/sbgbiocompute-objects/gcsbco_editor GenomicsBioCompute Compliance SuitePortal]<ref isname="bco_editor">{{cite web|url=https://github.com/biocompute-objects/bco_editor|title=BioCompute Portal|publisher=github.com/biocompute-objects|accessdate=2020-06-25}}</ref> (a Shinyform-based appweb application that can automaticallycreate buildand aedit BCOBioCompute andObjects includesbased on the IEEE-2791-2020 [[Open_standard|standard]], and a workflowBioCompute visualizationcompliant instance of [[Galaxy_(computational_biology)|Galaxy]].
 
== References ==