Brain Imaging Data Structure: Difference between revisions

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Revision as of 21:20, 13 October 2020

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The '''Brain Imaging Data Structure''' ('''BIDS''') is a standard for organizing, annotating, and describing data collected during [[neuroimaging]] experiments. It is based on a formalized file/folder structure and [[JSON]] based metadata files with [[controlled vocabulary]].<ref>{{cite journal |last1=Krzysztof |first1=Krzysztof |last2=Auer |first2=Tibor |last3=Calhoun | first3=Vince |last4=Craddock| first4=R. Cameron |last5=Das |first5=Samir |last6=Duff |first6=Eugene |last7=Flandin |first7=Guillaume |last8=Ghosh |first8=Satrajit |last9=Glatard |first9=Tristan |last10=Halchenko |first10=Yaroslav | last11=Handwerker |first11=Daniel | last12=Hanke |first12=Michael |last13=Keator |first13=David |last14=Li |first14=Xiangrui |last15=Michael |first15=Zachary |last16=Maumet |first16=Camille |last17=Nichols |first17=B. Nolan |last18=Nichols |first18=Thomas |last19=Pellman |first19=John |last20=Poline |first20=Jean-Baptiste |last21=Rokem |first21=Ariel |last22=Schaefer |first22=Gunnar |last23=Sochat |first23=Vanessa |last24=Triplett |first24=William |last25=Turner |first25=Jessica |last26=Varoquaux |first26=Gaël |last27=Poldrack |first27=Russell |journal=Scientific Data|volume=3|pages=160044|doi=10.1038/sdata.2016.44 |title=The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments|author=Krzysztof J|display-authors=et al |pmid=27326542 |pmc=4978148|year=2016}}</ref>

This standard has been adopted by a multitude of labs around the world as well as databases such as [[OpenNeuro]], SchizConnect, Developing Human Connectome Project, and FCP-INDI, and is seeing uptake in an increasing number of studies.<ref>{{cite journal|journal=Scientific Data|volume=3|pages=160110|doi=10.1038/sdata.2016.110 |title=A phenome-wide examination of neural and cognitive function|author=Poldrack, R. A.|display-authors=et al|year=2016}}</ref><ref>{{cite journal|journal=Frontiers in neuroinformatics|volume=7|pages=10|doi=10.3389/fninf.2016.00007 |title=Preparing Laboratory and Real-World EEG Data for Large-Scale Analysis: A Containerized Approach|author=Bigdely-Shamlo, Nima|display-authors=et al|year=2016}}</ref><ref>{{cite journal|journal=Nature Neuroscience|volume=20|pages=299|doi=10.1038/nn.4500 |title=Best practices in data analysis and sharing in neuroimaging using MRI.|author=Nichols, Thomas E.|display-authors=et al|year=2017}}</ref>